NBIS - National Bioinformatics Infrastructure Sweden provide support infrastructure and training in bioinformatics. NBIS is also coordinating the Swedish ELIXIR node.

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Introduction to Bioinformatics Using NGS Data. Held in Gothenburg May 15-19, 2017. Important Links. Pre-course material Schedule. Maps & Travel Info. Map over Gothenburg Map over Gothenburg University Travel Info. Helpful Things. Linux cheat sheet UPPMAX cheat sheet Mac keyboard layout. External Resources. IGV (Integrative Genomics Viewer) Home

You can find code ranging from simple bioinformatics resources and general programming tools right through to complete data analysis pipelines. The open source portal Editorial Board. The Policy for the SciLifeLab open source web portal allows the open source portal Editorial Board to develop and maintain the web site in a proactive manner. The National Genomics Infrastructure, NGI, at SciLifeLab is responsible for sequencing a large number of projects for users across Sweden. A new tool, published in Bioinformatics by Phil Ewels and colleagues at the NGI, allows the facility and users to summarize analysis results for an entire Filter publications based on the assigned labels. This filter is not applied if none are selected. Multiple select allowed.

Scilife bioinformatics

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SECAPR—a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments Andermann T, Cano Á, Zizka A, Bacon C, Antonelli A SRA: SRP131660 Zenodo: 10.5281/zenodo.1162653. PeerJ 6 (-) e5175 [2018-07-13; online 2018-07-13] BMC Bioinformatics 17 (Suppl 14) 431 [2016-11-11; online 2016-11-11] Affiliated researcher. PubMed DOI Crossref. Integrating multiple immunogenetic data sources for feature extraction and mining somatic hypermutation patterns: the case of "towards analysis" in chronic lymphocytic leukaemia.

Ett nationellt forskningscenter för molekylära biovetenskaper.

Science for Life Laboratory. We would like to invite you to a sneak peak of our new website before it goes live.

Assessing the consistency of public human tissue RNA-seq data sets. Danielsson F, James T, Gomez-Cabrero D, Huss … Open Source at SciLifeLab.

Scilife bioinformatics

jean.hausser@scilifelab.se consultant (bioengineering / bioinformatics) The lab is located at Karolinska Institutet and SciLifeLab in Stockholm, Sweden.

Scilife bioinformatics

Stockholm, Stockholm, SverigeFler än  Professor of Bioinformatics DBB, Stockholm University Science for Life Laboratory ORCID: 0000-0002-9015-5588. Email: Erik.Sonnhammer at scilifelab.se  scilifelab-lts/nbis-meta. SciLifeLab Bioinformatics LTS. /. Bioinformatics LTS. nbis- meta. Clone. A snakemake workflow for metagenomics. branch:master.

Scilife bioinformatics

64. AWS-iGenomes Reference genomes on AWS S3. 46. Chanjo Coverage analysis for clinical sequencing. 21. CheckQC Quick quality control of Illumina runs. 90.
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Bioinformatic researcher in Dr. Petter Brodin's Human Systems Immunology group  Title: SciLifeLab International Advisory Board – Report Appendices 2019 The SciLifeLab Data Center will try to integrate the bioinformatics  Links: SciLife Lab Stockholm · Tools of Science · Bioinformatics Infrastructure for Life Sciences(BILS). ©2009 BEA. Last Modified: October 2018.

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NBIS will enable world-class life science by providing expert knowledge, creative data integration, advanced training, efficient data publication and access to high-performance data and analysis methods. NBIS will continue coordinating bioinformatics support within Sweden and make bioinformatics easily accessible for life science researchers.

Relevant previous experience in sequencing or analysis SciLife Bioinformatics: short-term support - BILS . Bioinformatics Infrastructure for Life Sciences Originally VR infrastructure .


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nfcore/nanoseq is a bioinformatics analysis pipeline that can be used to perform basecalling, demultiplexing, mapping and QC of Nanopore DNA/RNA sequencing data. The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner.

The support is fully subsidized and free of charge, but extensive hands-on involvement is required by the applying research groups.

Next Generation Sequencing and Bioinformatics Analysis Pipelines Adam Ameur National Genomics Infrastructure SciLifeLab Uppsala adam.ameur@igp.uu.se

Wong K, Navarro JF, Bergenstråhle L, Ståhl PL, Lundeberg J. Bioinformatics. All samples, sequenced at the NGI, undergo a series of quality certified checks. Bioinformaticians not only make sure that the raw data to be delivered is of high quality (e.g., Q30, yield, etc), but also that sequences are biologically relevant by checking the absence of contamination and, depending on the specific application, by SciLifeLab is a national resource of unique technologies and expertise available to life scientists, closely intertwined with our community of researchers in areas such as … Project description We are seeking a postdoctoral fellow with a strong background in bioinformatics, especially with a focus on gene regulatory network inference and analysis of gene expression data. Main responsibilities The postdoc will participate in research projects, supervised by Profs. Erik Sonnhammer, Claudia Kutter and other participants in the projects. The project aims to generate […] SciLifeLab Bioinformatics (NBIS) and Genomics (NGI) were both top-ranked in the recent VR evaluation (September 2017). “NBIS is probably the largest genuinely national and fully established bioinformatics infrastructure in Europe.” “[NBIS..] is crucial to the future competitiveness of Sweden in data-driven life På svenska - SciLifeLab.

Alongside with courses and seminars there are mentorship programs and drop-in opportunities for discussing your own projects.